Supported Taxa
The AppIndels server relies on a database of previously identified and thoroughly validated CSIs. As such, we can only identify CSIs within certain currently supported taxa. The taxa currently supported by the AppIndels server are listed below. For more details, please see the our Scientific Background page.
See the below searchable list of taxa for which CSIs are present in our database. Alternatively, scroll down to browse hierarchically.
Taxa that are bolded have 2 or more CSIs specific to them in the database. Non-bolded taxa (which are parents to bolded taxa) are shown to provide phylogenetic/structural information but do not have CSIs in the database.
Supported Taxa
Clostridia
Peptoniphilaceae
Genus Peptoniphilus_A1 (Harei clade)
Genus Peptoniphilus_A2 (Lacrimalis clade)
Genus Peptoniphilus_E (Catoniae clade)
Genus Aedoeadaptatus
Genus Peptoniphilus_B (Duerdenii clade)
Stercorisuis clade
Peptoniphilus C
Anaerosphaera
Genus Anaerosphaera
Peptoniphilus A
Peptoniphilus E
Peptoniphilus B
Peptoniphilus sensu stricto
Lacrimalis clade
Genus Peptoniphilus_F (Stercorisuis clade)
Genus Peptoniphilus sensu stricto
Order Eubacteriales
Family Peptostreptococcaceae
Genus Clostridioides and Metaclostridioides
Genus Metaclostridioides
Genus Clostridioides
Genus Romboutsia
Genus Peptostreptococcus
Genus Terrisporobacter
Genus Paraclostridium
Genus Faecalimicrobium
Genus Peptacetobacter
Family Tepidibacteraceae
Genus Alkalithermobacter
Bacillota
Bacillales
Margalitia
Metabacillus
Planococcaceae (LPSN: Caryophanaceae)
Ureibacillus
Metalysinibacillus
Planococcus
Sporosarcina
Caryophanon
Solibacillus
Lysinibacillus
Metaplanococcus
Metasolibacillus
Bacillus Cereus Clade
Gottfriedia
Mesobacillus
Evansella
Cytobacillus
Schinkia
Alkalicoccus
Rossellomorea
Weizmannia
Sutcliffiella
Salibacterium
Salisediminibacterium
Niallia
Litchfieldia
Caldalkalibacillus
Ectobacillus
Robertmurraya
Bacillus Subtilis Clade
Caldibacillus
Lederbergia
Siminovitchia
Neobacillus
Alteribacter
Peribacillus
Heyndrickxia
"Alkalihalobacillaceae" (see Gupta and Kanter (2023))
Priestia
Fredninandcohnia
Order Bacillales
Family Salinicoccaceae
Genus Lacicoccus
Genus Salinicoccus + Lacicoccus
Genus Phocicoccus
Genus Jeotgalicoccus
Genus Aliicoccus
Genus Nosocomiicoccus
Genus Salinicoccus
Family Staphylococcaceae
Genus Mammaliicoccus
Genus Macrococcus + Macrococcoides
Genus Macrococcus
Genus Macrococcoides
Genus Staphylococcus
Familty Gemellaceae
Genus Gemella
Genus Gemelliphila
Lactobacillaceae
Weissella
Periweissella
"Leuconostoc + Fructobacillus + Convivina Clade"
"Fructobacillus + Convivina clade"
Fructobacillus
Leuconostoc
Oenococcus
Pseudomonadota
Gammaproteobacteria
Legionellales
"Coxiella + Rickettsiella Clade"
Rickettsiella
Coxiella
Aquicella
Betaproteobacteria
Neisseriales
Leeiaceae (LPSN)
Chitinibacteraceae (LPSN)
Chromobacteriaceae (LPSN)
Neisseriaceae
Aquaspirillaceae (LPSN)
Bacteroidetes/Chlorobi group
Chlorobi
Chlorobiales
Chlorobiaceae
Chloroherpetonaceae
Pseudomonadales
Pseudomonadaceae
Genus Ectopseudomonas
Pseudomonas sensu stricto
Pseudomonas paraeruginosa
Pseudomonas aeruginosa
Genus Zestomonas
Genus Azomonas
Genus Stutzerimonas
Genus Aquipseudomonas
Genus Serpens
Thiopseudomonas
Genus Caenipseudomonas
Halopseudomonas
Genus Azotobacter
Genus Chryseomonas
Genus Metapseudomonas
Genus Geopseudomonas
Genus Phytopseudomonas
Atopomonas
Spirochaetes
Spirochaetales
Borreliaceae
Borrelia
Borreliella
Order Eubacteriales
Family Peptoclostridiaceae
Genus Peptoclostridium
Order Bacillales
Family Abyssicoccaceae
Genus Abyssicoccus
Legionellales
Legionellaceae
Legionella